Bioinformatics

Courses Offered

SNO NAME OF COURSE Major/ Minor/ SEC/ VAC/ MDSC DURATION SEATS ELIGIBILITY PO/ CO (AS PER NEP)
1. B.Sc. (Hons.) Bioinformatics FYUP (Multi-disciplinary Scheme)
  • Major – Introduction to Biomolecules, Fundamentals of Bioinformatics-I, Fundamentals of Biochemistry, Fundamentals of Bioinformatics II Maths and Computer Fundamental for Biologist, Statistical Methods in Bioinformatics
  • SEC – Tools for Biological Data Analysis, Computational Tools for Biomolecules and Chemical Compounds
  • MDSC – Introduction to Bioinformatics- I & II
4 years 30 10 + 2 Science (Medical/ Non-Medical)
  • Disciplinary knowledge
  • Communication Skills
  • Critical thinking
  • Problem solving
  • Analytical reasoning
  • Research-related skills
  • Cooperation/Teamwork
  • Scientific reasoning
  • Reflective thinking
  • Self-directed learning
2. B.Sc. Bioinformatics FYUGP (Single Major and Single Minor)
  • Major – Bioinformatics
4 years 30 10 + 2 Science (Medical/ Non-Medical)
  • Disciplinary knowledge
  • Communication Skills
  • Critical thinking
  • Problem solving
  • Analytical reasoning
  • Research-related skills
  • Cooperation/Teamwork
  • Scientific reasoning
  • Reflective thinking
  • Self-directed learning
3. B.Sc. (Hons.) Bioinformatics 3 years 30
  • Disciplinary knowledge
  • Communication Skills
  • Critical thinking
  • Problem solving
  • Analytical reasoning
  • Research-related skills
  • Cooperation/Teamwork
  • Scientific reasoning
  • Reflective thinking
  • Self-directed learning
4. M.Sc. Bioinformatics 2 years 40 A Bachelor’s degree in Science (General or Honours) with Bioinformatics, Biotechnology, Biochemistry, Botany, Chemistry, Electronics, Genetics, Life Sciences, Mathematics, Mathematics & Computing, Microbiology, Physics, Statistics, Zoology, Agriculture, Computer Science, Engineering, Medicine, Pharmacy and Veterinary Science with at least 50% marks (45% for SC/ST/OBC category).
  • Advanced computational skills and programming languages.
  • Integration of knowledge of Molecular Biology in data mining.
  • Wide research opportunities.
  • Data mining experts and Bioinformatician.

Faculty & Staff Details

S NO Name Qualification Vidwan ID Email ID CV (Sample Attached)
1. Mr. Varinder Kumar M.Sc 275731 [email protected] Attachment
2. Mrs. Chanderjyoti M.Sc. 274692 [email protected] Attachment
3. Mr. Sandeep M.Sc. 131586 [email protected] Attachment
4. Dr. Ruchi Sachdeva Ph.D. 274662 [email protected] Attachment
5. Dr. Nidhi Kumari Ph.D 298412 [email protected] Attachment
6. Ms. Isha Goyal M.Sc. 586348 [email protected] Attachment

*Note that the following faculty list includes permanent, ad-hoc, contractual, and guest members.

About the Department

The Department of Bioinformatics was established in 2004 with UGC funding under the Innovative Program scheme, making it the first in the region. Located in Chandigarh, it serves as a central hub for Bioinformatics education and research. The department aims to develop skilled professionals in Bioinformatics, Biotechnology, and related fields, offering UG and PG courses. It has well-qualified faculty, research facilities, and computer labs. The department also promotes scientific learning through extension lectures, modern teaching aids, and career development activities.

Projects

Project Name Agency Team Area Project Duration Project Amount Completion
Application of Bioinformatics in Detecting Molecular evolution and Phylogeny of snake venom protein of Indian Venomous Species UGC-New Delhi Mr. Varinder Kumar 02 years

Publication

Name No. of Publications with ISSN number No. of Books with ISBN number
Mr. Varinder Kumar 10 01
Ms. Chander Jyoti 09
Mr. Sandeep 12 01 (Book chapter)
Dr. Ruchi Sachdeva 10
Dr. Nidhi Kumar 07 04 (Book chapters)
Ms. Isha Goyal

Facilities

Core Facility Allied Facilities
UG Bioinformatics Lab Microbiology Lab
PG Bioinformatics Lab Biochemistry Lab
Bioinformatics Research Lab Genomics & Proteomics Lab
Molecular Biology Lab Physics Lab
Laminar Room Chemistry Lab
UPS Rooms Digital Library
Seminar Hall Centralized Instrumentation Lab
Information Technology Lab

Computing Facilities

Two Computer Labs with a server, required software and Internet Facility has been set up in the Department. Besides that, central computing facilities are also available in the Advanced IT Block as well as the Network Resource Centre within the campus itself, so that the students can access and browse through the latest Literature.

Hardware Quantity
Lenovo Desktop All in One (Lenovo intel i-7, 3.20 GHz) 30
Workstation (HP and IBM) 01+01
Lenovo Desktops (Lenovo intel i-5, 2.50 GHz) 16
Lenovo Desktops (Lenovo intel i-5, 2.90 GHz) 10
HP Laptop (P-IV, 1.60 GHz) 02
DELL Laptop (i3) 01
Sony LCD Projector 01
Smart Board with Projector 01
Overhead Projector 01
UPS 20 kVA 01
HP Laser Printer (1020) 01
Canon Laser Printer (1005 & D520) 01
Scanner (Scanjet) 01
Operating Systems
Windows XP and 7, 10 Fedora Core/Red Hat
MS Office
MS Office 2010 MS Office XP & 2007 MS Office 2003 Server
Antivirus
Norton 360 Total Security
Other Tools & Software’s
Oracle 9i Visual Studio 7.0 Corel Draw
Macromedia Studio 8.0, MX Dream weaver 8.0 Fireworks 8.0
C, Turbo C Active Perl, BioPerl FoxPro, XML
Adobe Photoshop 7.0 Fox IT Reader Adobe Acrobat 7.0
Bioinformatics Software
DNASTAR (Sequence & Structure Analysis & Annotation Package)
Discovery Studio 2.1 (Drug Designing and Lead optimization Suit)
Gaussian09 & Gauss View05 (Electronic Structure Modelling Tool)
SPSS
Molecular Modelling Tool – HYPERCHEM 8.0
Statistical Analysis Tool – MINITAB 16.0
Sequence Analysis, Phylogenetic Analysis and Other Analytical Tools
Accery’s GCG Package with 300 GB database installed locally on the server
PAUP
Exome ED

Department also has the rich collection of free bioinformatics software like Ligbuilder, Autodock, Modeller, MEGA, Hammer, Glimmer, Mummer, TreeView, Babel 2.0.0, Dragon, Chimara 5-0.1.3- beta, PhylPro, Phylip, PyMold, RasMol, SPDBViewer, Hex, Sequencer 4.6 Demo, Emboss 0.7 & 0.5, ISIS CHIME Draw 24, Ecell 3.1.103, Vcell, Gepasi etc.

Software Tools Developed By The Students

  • Phosphene – Protein Secondary Structure Prediction Tool
  • BIOVB – A Sequence Analysis Tool
  • AVERO – Patient Record Management System
  • ANALYTICA – Tool for analysis of Statistical, Mathematical and Biological Data
  • SAN (Search Analyze Navigate) – A web based nucleotide and protein sequence analysis tool
  • SAT – Sequence Analysis Tool for biological sequences
  • Sequa Analyzer – A tool for nucleotide and protein sequence analysis
  • ProLoc – Protein Localization Prediction Tool
  • RNA PRE – RNA Prediction Tool

Equipments

A number of Basic Instruments are available for the carrying out wet lab experiments

  • UV-Visible Spectrophotometer
  • Blotting Apparatus
  • Gel Documentation System
  • Electrophoresis Apparatus
  • Incubators
  • Autoclave
  • Laminar Flow Cabinet
  • Refrigerators
  • Phase Contrast Microscope
  • Colony Counter Digital
  • Micro centrifuge
  • pH Meter
  • Colorimeter
  • Electronic Balance
  • Vortex
  • Filtration Assembly
  • Hot Plate, Incubator
  • Magnetic Stirrer
  • Freezer (-200 C)
  • Microwave Oven

Departmental Activities

(Seminar/Workshop/Lecture/Conference/Outreach/Any other )

(Year Wise of Last 05 Years)

SNO. Date Name of the activity Details of the activity Key Speaker/ Guest Activity Type (Seminar /Workshop/ Lecture/ Conference/ Outreach Activity) Remarks
2024-2025
1. September 28 2022 From Classroom to career: Unleashing the potential of data science Ms. Yashica Sharma presented several case studies explaining the applications of data science in solving diverse problems. Ms. Yashica Sharma Lecture Ms. Yashica Sharma highlighted the transformative role of data science in diverse sectors, with a special focus on the dairy industry. She emphasized the critical role of statistics and bioinformatics in analyzing data to enhance the efficiency and sustainability of dairy farming.
2023-2024
1. 9-11 Oct,2023 Byte-Buddies: Python for Bioinformatics Final year students taught Python programming to juniors. Mr. Aryan Jaitly, Ms. Hargun and Ms. Divya 3 days Workshop During the workshop hands-on training in Python basics to specialized areas within Python tailored for bioinformatics was taught by the presenters. Students were trained with imparting valuable insights and practical skills for leveraging Python in bioinformatics research and were engaged in real-world bioinformatics exercises and strengthening their proficiency in Biopython
2. 27-11-2023 IISER Mohali Visit One day educational visit to Indian Institute of Science Education and Research (IISER) Mohali was organized on the occasion of its 17th Foundation Day Outreach activity
3. 12-14 October 2023 CHASCON-2023 Students and faculty participated and presented their work at Chandigarh Science Congress National Conference: Oral & Poster presentation and Abstract publication in Chandigarh Science Congress(CHASCON-2023) on “GLOBAL SCIENCE FOR GLOBAL WELLBEING” in the Basic Medical Sciences section at Department of Microbiology, Punjab University, Chandigarh Three students won prizes for oral and poster presentations.
4. February 28-29 2024 BioRhythm Students showcase their artistic talent including music, singing, acting, writing etc. Science Fest
2022-2023
1. February 27, 2023 Alumni Meet The Bioinformatics club of the Department of Bioinformatics organized an alumni meet with Mr. Akshay Suhag, a graduate from the 2014-17 batch. Akshay Suhag has completed his master in Bioinformatics from Saarland University, Germany, and is currently pursuing his PhD in Single Cell RNA Seq Data Analysis and Multi-omics Data Analysis from the University of Bern, Switzerland Akshay Suhag, Computer Scientist, EMBL, Germany Alumni Meet Dr. Suhag, motivated the students to build their biology basics and fundamental concepts of logic through programming languages like C/C++. ,R and Python.
2021-2022
1. May 27, 2022 Alumni Meet Alumni meet, Mr. Ikjot Sidhu, MS, Boston University, US Bioinformatics Analyst at School of Medicine in New York University. Alumni Meet Mr. Sidhu gave an insight on how the students can enhance their skills related to Bioinformatics Data Analysis and emphasized on application based learning, Programming languages including R, Python.
2. May 26, 2022 Expert Lecture on “Hamara AYUSH Hamara Swasthya Lecture was conducted in collaboration with Shri Dhanwantry Ayurvedic College & Hospital, Sector-46 organized an expert lecture on Hamaara AYUSH Hamaara Swasthya under the scheme of promotion of Ayurved among students, Ministry of Ayush, Government of India Dr. Kanika Aggarwal, Associate Professor Lecture Lecture Highlighted importance of Ayurveda and Meditation in daily life for disease prevention and treatment.
3. March 29 2022 Advancement in machine learning and artificial intelligence Seminar was organized under the aegis of Department of Science & Technology & Renewable energy, Chandigarh Administration Dr. Rishemjit Kaur & Dr. Ritesh Kumar, Principal Scientist, Centre of Excellence for Intelligent Sensors and Systems (ISenS), CSIR-CSIO, Chandigarh Seminar Expert talks on the role of artificial intelligence in analyzing exponentially increasing biological data and in predictive diagnosis of severe diseases.
4. April 6 2022 Educational Visit One day educational visit to the Next Generation Sequencing facility at the Advanced Pediatrics Centre (APC), PGIMER (Post Graduate Institute of Medical Education and Research), Chandigarh was organized Dr. Prateek Bhatia at the Advanced Pediatrics Centre (APC), PGIMER (Post Graduate Institute of Medical Education and Research), Chandigarh. Outreach Activity During the visit, students were briefed by Dr. Prateek Bhatia, about the advantages and limitations of traditional and latest NGS technologies in clinical settings for disease diagnostics, prognostics and prediction. Dr. Bhatia also explained workflow of NGS, from sample preparation to bioinformatics data analysis. The technical session was followed by a demonstration of the NGS platform, ION-Torrent in the next-generation sequencing facility of PGIMER.
2020-2021
1. June 12 2021 Education Opportunity in India and Abroad A lecture was organized on the emerging opportunities of higher education in Indian and foreign universities Mr. Arun, Operations Manager for Delhi/NCR & Chandigarh, Jamboree India Lecture
2. 22 May 2020 How to Read Scientific Literature? A webinar was organized in association with NCCS (National Centre for Cell Science) and IISER, Pune and Persistent Systems Lecture
3. Feb 27 – Mar 4 2020 Biological Data Analysis and Data Science Department of Bioinformatics and Department of Biochemistry organized a One Week FDP under the Rashtriya Uchchattar Shiksha Abhiyan, Chandigarh Administration FDP The objective of this program was to expose students and faculty to recent developments in the Data Analysis and Data Science areas and provide them knowledge and skills beyond their regular course curriculum.
4. May 27 – 30, 2021 BioRhythm e20 Students showcased their music, singing, acting, writing and artistic talent during an online fest using a social media platform. Annual Science-cum-Cultural Fest The event was conducted using a social media platform wherein our official instagram account @biorhythm2020 has received over 2 lakh Impressions and reached 32812 unique users in 4 days.

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